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Frequently Asked Questions

My collaborator gave me a read file far from FASTQ. What should I do?

FAQ
First, you should understand what your file means, and then convert your file to the standard FASTQ format. This page may help, too. If you still have difficulty to identify the format, feel free to send an email to the maq-help mailing list, or directly contact with me. Maq indexes all the input reads and scan through the reference for several times. It only stores the best two hits in the memory.
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Will SolexaPipeline generate the FASTQ file Maq needs? If not, what should I do?

FAQ
The Gerald module of the SolexaPipeline generates a FASTQ-like format, but it is not a FASTQ in fact. You should convert the format with "maq sol2sanger". This page gives more explanation. The latest SolexaPipeline-0.3.0 generates a new file in the "Export" format. Read sequences, qualities and most of alignment information is stored in this file.
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How do I become a collaborator?

Provenance Research FAQ (Research at the Getty)
If you have an interest in becoming a volunteer collaborator to the Getty Provenance Index Databases, please send an email with your qualifications to pscp@getty.edu.
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How do I find a collaborator?

Sarah Wernick
If you're an expert with a high profile in your profession, a writer might find you. I contacted Miriam Nelson of Tufts University after reading an article she wrote for the Journal of the American Medical Association (JAMA); we subsequently collaborated on three books. It is difficult to express the magnitude of thanks, admiration and respect that I have for my collaborator, Sarah Wernick.
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How do I let an applet read a file?

Applet Security
Sun's appletviewer allows applets to read files that are named on the access control list for reading. The access control list for reading is null by default, in the JDK. You can allow applets to read directories or files by naming them in the acl.read property in your ~/.hotjava/properties file. Note: The "~" (tilde) symbol is used on UNIX systems to refer to your home directory. If you install a web browser on your F:\ drive on your PC, and create a top-level directory named .
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On what platforms can I read a PDF file?

Adobe - Reader: Frequently asked questions
Adobe Reader 7.0 is supported by the later Windows® platforms (Windows 2000 with Service Pack 2, Windows XP Professional or Home Edition, or Windows XP Tablet PC Edition), Mac OS X v.10.2.8 or 10.3, Palm OS® 3.0 (or later) and Pocket PC 2002 or 2003 platforms for handheld devices, Symbian OS™, Linux®, AIX®, HP/UX, and Solaris™.
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Can I read my parameters from a file?

Manual
This means that the gaps will be reset and that the alignment you provide will not be considered as an alignment, but as a set of sequences. Please, note that the previous usage supersedes the use of the ?convert flag. Its main advantage is to restrict computation time to the actual library computation. You cannot concatenate these files on their own. You will have to use t_coffee. Assume you want to combine tc_lib1.tc_lib and tc_lib2.tc_lib.
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How should I read a file?

Faq - SmartEiffelWiki
In order to read a file, read a character and then use last_character ONLY if if end_of_input has not been reached while reading the character. Before each read (except the very first), you have to test end_of_input, because all read_* procedures require not end_of_input. But why? This require means that if some previous read failed because end of input has been reached, then it is not valid to try to read again. Example: file: TEXT_FILE_READ; file_name: STRING ..
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Some game only gave me img(img) file, what do I do with it?

Frequently Asked Questions
You would need to get an emulation program to run these special made games. The best program for this is Dameon Tools. Visit help section for link to download.
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I the only person who has read down this far on the page?

The Brew Crew - Kegs for Parties. Your Account Administratio...
Yes, now get some people together for a party. You are a bloomin' expert now. If your question is not here, please contact us.
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I've read this far...do I get a prize or something?

The Womb - FAQ
Yes. Some day soon a very good and unexpected event will occur in your life without reasonable explanation...this is a manifestation of our internet powers. When it happens you will be one step closer to Buddah so remember...tread softly and carry a big schtick...it worked for years in the Catskills!
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I noticed that you gave a low ranking to a really great article I read. Why?

Product Reviews and Reports by Consumer Search - ConsumerSea...
ConsumerSearch does not rank reviews based on how well written they are or on how informative they are. Instead, we look for a review's credibility in identifying the best products or services. Many otherwise excellent articles or information sources don't make it into our charts because they don't make recommendations, or when they do, the recommendations do not indicate how the products stack up against their peers.
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Oh no, DevHook gave me a corrupt file, what shall I do?

GUIDE: FULL DevHook FAQ - QJ.NET Forums
Connect your PSP via USB then enter My Computer, right click on your PSP's connection and click "Scan selected drive".
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Can I file a grievance over my termination if the agency gave me the choice of quit or be fired?

EDR
Again, it depends. If you initiate a grievance prior to the effective date of separation from employment, then your grievance will be allowed to go forward, at least through the management steps. Also, if the evidence sufficiently question as to whether your resignation may have been involuntary, then you may use the grievance procedure if you file your grievance within 30 calendar days of being presented with the “quit or be fired” choice.
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Did you use the bats.xml file i gave you ?

C2k5 Player Editor [Archive] - Page 2 - PlanetCricket Forums
what is the import/Export button in your player Editor for can we import and replace faces with new faces if so how thanks. Problem is the aussie faces. :help :hpraise :onpc Well the import/Export button has no relation with face making/importing/exporting. It is only for importing/exporting players from one roster to another.
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How far is it?

Frequently Asked Questions about the pilgrimage to Santiago ...
Roncesvalles to Santiago is about 800 km i.e. 4-5 weeks walking or 2 weeks by bike. Seville to Santiago, on the Via de la Plata, is 1000 km, walkable in about 6 weeks. Le Puy to Roncesvalles is about 5 weeks walking, Vézelay similar. Paris to Santiago is 2000 km. Arles to Puente la Reina is about 900 km. For descriptions of all the routes, click here.
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Why can't my perl program read from STDIN after I gave it ^D (EOF) ?

Perl FAQ
Try keeping around the seekpointer and go there, like this: $where = tell(LOG); seek(LOG, $where, 0); If that doesn't work, try seeking to a different part of the file and then back. If that doesn't work, try seeking to a different part of the file, reading something, and then seeking back. If that doesn't work, give up on your stdio package and use sysread. You can't call stdio's clearerr() from Perl, so if you get EINTR from a signal handler, you're out of luck.
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How do I get my application to read the app-defaults file?

Integrated Computer Solutions Incorporated - Frequently Aske...
Many users are confused on how to connect their app-defaults file to their application. To get your application to pickup your app-defaults file, you need to take the following steps: Set the name for the app-defaults file in the File Names tab of the Main Window->Options->Code Generation Preferences. In the Application Tab of the Code Generation Preferences, make the Application Class match the name of the app-default file you set in #1.
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When I recover files I get "Can't read file to be recovered completely (801)". What does it mean?

R-TT - FAQ
It means that the file under consideration extends beyond the partition it resides on. That means either severe data lost or that you use wrong Recognized partition to recover the file. Please explore all such partitions. A Red cross on the icon means that file has been deleted and will have to be recovered to be accessed by the system. That is it. Files without the red cross are not marked as deleted.
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How do I read an STL file in V5?

Frequently Asked Questions - A Bravenet.com Faq
Check out the STL license Create a CATPart Load the STL Workbench Select the Import button Set the file type to ASCII-Free and Browse to read the .stl file This will load the raw STL data into the open part Any further manipulation requires further training (try F1 Help).
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Q24. How can I read a Published File?

Catura's SmartDoodle :- Faqs
A Published file can only be read by the software which we provide named SmartDoodle READER, one cannot read a published file without this software.
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Can I read charts from Excel file?

PHP Excel Explorer - FAQ
No. You can retrieve worksheet type in order to show or store that this worksheet has a chart type, but you cannot read data from it.
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Can you read my file format?

English for Research - Frequently Asked Questions and Help
If you use another program or format, for example PDF, WordPerfect, StarSuite or Scientific WorkPlace, we recommend that you convert your document to Microsoft Word or Rich Text Format (RTF) for language editing.
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I cannot read the pdf format of file, what can I do?

ice cream machines for homemade ice cream, soft ice creams
Pdf file is the most secure and popular kind of file in Internet, you need Acrobat Reader to open it. Nowadays every computer should have it installed in the operating system. If you cannot open the pdf file you must download the program, it is a freeware.
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How do I read barcodes from a PDF File?

Softek Software - FAQ Page
Linux developers can use Ghostscript to convert the PDF document to TIF before calling the Softek Barcode Toolkit to read the barcode:
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Why can't I read my CIF file ?

Frequently Asked Questions
CIF is the Chiron Interchange Format, not the Crystallographic Information File. The former is the file format of the Chiron stereochemistry evaluation program from Prof. Hanessian, Montreal. It (and the file format name) existed long before the Crystallographic Information File format was defined.
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How do I read the file that my Professor posted?

Blackboard Help - College of Southern Idaho
Some professors will post files other than Microsoft Word, Microsoft PowerPoint or Adobe Acrobat files. In some cases, you will need a specific piece of software to read these files (e.g., CAD software, Adobe Illustrator, Macromedia Flash). If you do not have access to these programs on your personal computer, you will need to either download the file and take it to a computer lab or download the file in a computer lab where there are computers with this software.
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How can I get rid of a "File Read Error"?

Aerowinx FAQ
Some customers reported a "File Read Error" message after installing and running PS1.3. The error has not been completely isolated, yet. However, it is obvious that the error lies in the PS1.3 installation program, respectively in the Windows file system. The customers reported that this error does not occur if the simulator is installed in the default directory named C:\PS13 - or if the simulator is installed on another hard disk partition.
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Which type of file can WordAloud read?

Cloudworld's WordAloud is a teaching aid for synthetic phoni...
WordAloud can read any plain text file (a file with a .txt extension) or HTML file (with a .htm or .html extension). Other text files, such as Microsoft Word files and PDF files, need to be converted into plain text of HTML format in order to be read.
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