Once you have these files, type the following at the command line: autogrid4 -p my_receptor.gpf -l my_receptor.glg & optionally, a flexible residues file saved in PDBQT format, holding the atoms in the receptor that will be treated as moving Once you have these files, you can type the following at the command line: autodock4 -p my_docking.dpf -l my_docking.dlg &

To run AutoDock on Windows, you must first download and install Cygwin, a Linux-like environment for Windows. Cygwin is available from http://www.cygwin.com. Follow the instructions for installing and setting up Cygwin from the Cygwin web site. There is also plenty of documentation about Cygwin. Download the AutoGrid and AutoDock binaries for Cygwin: they are called autogrid4.exe and autodock4.exe (or autogrid3.exe and autodock3.exe, depending on which version you downloaded). See similar questions...

ntbackup <operation> <path> /a /b /d "text" /e /hc:<on/off> /l "<filename>" /r /t <backup type> /tape:n /v This will be backup . If you wanted to eject a tape you could enter eject (but must also include the /tape parameter) The list of drives and directories to be backed up. You may not enter file names or use the wildcard character. To backup multiple drives just put a space between them, e.g. ntbackup backup c: d: etc.. See similar questions...

Try this code: Dim g as Graphics g = frmMain.CreateGraphics() g.DrawLine(Pens.Black, new Point(0,0), _ new Point(frmMain.ClientRectangle.Width), frmMain.ClientRectangle.Height) g.Dispose() This should draw a line from the upper left to the bottom right... See similar questions...

First, of course install TSC. Open TSC and right click on the icon in your task bar (near the clock). Select properties. Set your candidate queue to whatever you want. I max mine out. If you have a dialup computer, unselect the online tab. Click ok, and then right click again and select exit. In this directory, there is a file called readme.txt.. it might be a good idea to read this. It's kind of hard to understand. Now edit (with notepad or something like it), the file called launch. See similar questions...

Given a pair of Unix mailbox format files (each message starts with a line which begins with 'From '), one containing nothing but spam and the other containing nothing but ham, you can train SpamBayes using a command like: python sb_mboxtrain.py -g ~/tmp/newham -s ~/tmp/newspam The above command is OS-centric (e.g., UNIX, or Windows command prompt). You can also use the web interface for training as detailed above. See similar questions...

If the number of parameters on the command line gets unweildy, pass in the location of a property file that defines a set of parameters. Alternatively, the JUnit-addons package contains the XMLPropertyManager and PropertyManager classes that allow you to define a property file (or XML file) containing test parameters. See similar questions...

MATLAB v4.1 has a an axis property LineStyleOrder for this. Monochrome users can tell MATLAB to always use white lines and cycle through their favorite line styles with the commands: set( 0, 'DefaultAxesColorOrder', [1 1 1] ) set( 0, 'DefaultAxesLineStyleOrder', '-|:|--' ) See similar questions...

where your-app-JNLP-URL is the location of your application's JNLP file. For example: javaws http://java.sun.com/products/demos/swingset2.jnlp See similar questions...

Simply type devenv.exe from the command line. If you get a message like this, then you do not have devenv.exe in your path. >>> 'devenv.exe' is not recognized as an internal or external command, operable program or batch file. >>>... See similar questions...

Replace the binary /usr/local/bin/emacs (or wherever you installed it) with a file containing the following two lines (of course you need to change the pathname according to where you have put the Emacs.app application bundle). Then typing emacs (provided /usr/local/bin is include in your PATH environment variable) will start Emacs in GUI mode. Typing emacs -nw will start Emacs in terminal mode. See similar questions...

Use the command line putty -ssh host.name. Alternatively, create a saved session that specifies the SSH protocol, and start the saved session as shown in question A.6.4. See similar questions...

Yes, for this purpose there are console versions of our utilities - DB Comparer for MySQL Console Application and Data Comparer for MySQL Console Application. All console tools support configuration files (templates) that are created in GUI versions of the programs. The template file contains all the infomation necessary for working with the console version of the tool. See similar questions...

If you have a problem that is not covered by this FAQ, do not hesitate to contact our technical support team. See similar questions...

In case you need to implement a shortcut (like ^A of some UN*X-shells) to jump to the beginning or the end of the current input line, there are two private instance methods you could utilize: _getLineEnd(<row>, <col>)' returns an array [<row>, <col>] with the position of the last character in the logical input line with ASCII value >= 32 (0x20). See similar questions...

If you have a problem that is not covered by this FAQ, do not hesitate to contact our technical support team. See similar questions...